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Illumina Basespace is a cloud-based platform for analyzing and managing genomic data, enabling users to store, share, and process large datasets generated from next-generation sequencing (NGS). The primary use case is to facilitate genomic research and diagnostics through streamlined data management and analysis.
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Domain knowledge for Illumina BaseSpace — workflow patterns, data models, and gotchas for your AI agent.
Illumina BaseSpace is a cloud platform for genomic data from next-generation sequencing. Store, share, and process NGS datasets.
Illumina Basespace List App Files
Access files from app results within a specific app session on Illumina Basespace, helping you to download or inspect a…
Illumina Basespace List Appresults
Pull a list of app-generated results stored in app sessions that are part of your analysis workflow on Illumina Basespa…
Illumina Basespace List Appsessions
Get a list of application sessions utilized within your Illumina Basespace environment.
Illumina Basespace List Projects
Retrieve a list of all your projects on Illumina Basespace, useful for tracking and managing different genomic data ana…
Illumina Basespace List Run Files
List all files associated with a particular sequencing run on Illumina Basespace.
Illumina Basespace List Runs
Fetch a list of all sequencing runs associated with your Illumina Basespace account.
Illumina Basespace List Sample Files
Retrieve file sets related to a specific sample in a project, which is crucial for accessing raw data and outputs relat…
Illumina Basespace List Samples
Access a list of all samples within a specified project on Illumina Basespace.
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Browse all toolsIllumina Basespace is a cloud-based platform for analyzing and managing genomic data, enabling users to store, share, and process large datasets generated from next-generation sequencing (NGS). The primary use case is to facilitate genomic research and diagnostics through streamlined data management and analysis. It provides 8 tools that AI agents can use through the Model Context Protocol (MCP).
Add the MCPBundles server URL to your MCP client configuration (Claude Desktop, Cursor, VS Code, etc.). The URL format is: https://mcp.mcpbundles.com/bundle/illumina-basespace. Authentication is handled automatically.
Illumina BaseSpace provides 8 tools that can be called by AI agents, along with a SKILL.md that gives your AI agent domain knowledge about when and how to use them.
Illumina BaseSpace uses API Key. Illumina BaseSpace requires credentials. Connect via MCPBundles and authentication is handled automatically.
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